Welcome to the Metagenomics Workshop in Uppsala¶
This is a one day metagenomics workshop. We will discuss quality checking, assembly, taxonomic classification, binning and annotation of metagenomic samples. The workshop is developed by the Environmental Genomics group at KTH / SciLifeLab.
Here is a link to the official homepage for the SciLifeLab workshop in metagenomics.
A presentation for this workshop is available here.
- Getting started
- Connecting to UPPMAX
- Checking required software
- Quality Control
- Community analysis using 16S reads
- Metagenomic Assembly