Welcome to the Metagenomics Workshop in Uppsala¶
This is a one day metagenomics workshop. We will discuss quality checking, assembly, taxonomic classification, binning and annotation of metagenomic samples. This workshop is developed by the ‘Environmental Genomics group’_ at KTH / SciLifeLab.
Here is a link to the official homepage for the SciLifeLab workshop in metagenomics.
A presentation for this workshop is available here.
- Connecting to UPPMAX
- Checking required software
- Quality Control
- Community analysis using 16S reads
- Metagenomic Assembly
- Taxonomic Classification
- Functional Annotation